miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|67053644|gb|CD475654.2|CD475654 ATCCTAATGAATCTTGGGAAGTCAATCTTCCTTCAGAAGAAGTACCTCCTGAGCTTCCTGAGCCAGTGCTGGGAATCAAC
TTCTCTAGGGATGGCATGTTGGAAGAGGATTGGCTTAAACTTGTGGCACTTCACAGCGATTCTTGGCTGATTGCTCTTGC
CTTTTATTTTGGGCTACGATTTGGATTTGATAAAAATGATAGAACGAGGCTGTTTAACATGATCAATGGTCTTCCATCTA
TTTATGAGGTAGTTTCTGGCAAAAAGGAAGCACAAGAAGTATCCAGTGTTACAAATAATGGTAGCAGTAAGAGCAAGAGA
GAGAGCACAACAAAAGCATCTAGGGCACCAGGTGGCCAAGATGATGAGGATGACGAAGAAGAAGAGGATGAACACAAGGA
TGCTTTCTGTGGGGCGTGCAGCATGAATAACTCGCCAAACCAGTTCTGGATCTGTTGTGACATTTGTGAGAG




Most similar to sp|O81488|Y5621_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O81488|Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsis
           thaliana GN=At5g26210 PE=1 SV=2
          Length = 255

 Score =  147 bits (371), Expect = 3e-35
 Identities = 78/170 (45%), Positives = 103/170 (60%), Gaps = 14/170 (8%)
 Frame = +3

Query: 3   PNESWXXXXXXXXXXXXXXXXXXGINFSRDGMLEEDWLKLVALHSDSWLIALAFYFGLRF 182
           PNE W                  GINF+RDGM E+DWL LVA+HSD+WL+A+AF+FG RF
Sbjct: 54  PNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARF 113

Query: 183 GFDKNDRTRLFNMINGLPSIYEVVSG--KKEAQEVSSVTNNGSSKSK------RESTTKA 338
           GFDK DR RLFNM+N LP+I+EVV+G  KK+ ++ SSV+NN S++SK       ES  K 
Sbjct: 114 GFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKF 173

Query: 339 SRAPGGQXXXXXXXXXXXHKD------AFCGACSMNNSPNQFWICCDICE 470
           S+ P  +            +D        CGAC  + + ++FWICCD+CE
Sbjct: 174 SK-PEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCE 222